Agreed with @dirk-thomas's comment.
I would expect your executables to be installed in `bin` so it should be on the `PATH` and can be invoked directly from the commandline.
If you want the executables to not be on the path and to be invokable using `ros2 run` you need to them install to `<install-prefix>/lib/<pkgname>`, you can specify this in the `setup.cfg` file:
https://github.com/ros2/examples/blob/a75151ef1388b565268508228df42c06462c1337/rclpy/topics/minimal_publisher/setup.cfg
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